Package index • speed

Design

Functions to help with the design of experiments.

speed(): Optimise Experimental Design Layout Using Simulated Annealing

Metrics

Functions to optimise designs in different ways.

Objective functions

objective_function_piepho(): Objective Function with Metric from Piepho
objective_function_signature() objective_function(): Default objective functions

Calculation functions

Functions that calculate values for the objective functions

calculate_adjacency_score(): Calculate Adjacency Score for Design
calculate_balance_score(): Calculate Balance Score for Experimental Design
calculate_ed(): Even Distribution Calculation
calculate_efficiency_factor(): Calculate Efficiency Factor according Piepho
calculate_nb(): Neighbour Balance Calculation
get_edges(): Get Weighted Edges
get_vertices(): Get Vertices of Each Item

Plotting

Functions for checking designs.

autoplot(): Generate plots for designs generated in speed
plot_progress(): Plot Optimization Progress
print(<design>): Print method for speed design objects

Helper Functions

Utility functions to initialize objects.

create_pair_mapping(): Create Pair Mapping
initialise_design_df() initialize_design_df(): Initialise Design Data Frame
add_buffers(): Add buffers to an existing design

Advanced options

speed-options: Package Options for speed